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Graphviz
Graphviz 2.31 B20130518   
... and networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual interfaces for other technical domains. The Graphviz layout programs ...
Freeware
tags: graph layout, automated rendering, output format, graph, automate, layout

Biopython for Windows (x64 bit)
Biopython for Windows (x64 bit) 1.61   
... the needs of current and future work in bioinformatics. The source code is made available under the ... the world. We work along with the Open Bioinformatics Foundation, who generously host our website, bug tracker, ...
Open Source
tags: biological x64, x64 python, x64 biopython, x64 bio, x64bioinformatic, Windows x64

MZmine
MZmine 2.10   
... on the original MZmine toolbox described in 2006 Bioinformatics publication, but has been completely redesigned and rewritten ... initiated by Matej Oreši? of Quantitative Biology and Bioinformatics group at VTT Technical Research Centre of Finland ...
Open Source
tags: analyze mass spectrometry data, mass spectrometry data analyzer, compile raw data, analysis, analyze, analyzer

Advanced Pathway Painter
Advanced Pathway Painter 2.29   
This freeware program visualizes pathways (KEGG, BioCarta, GenMAPP, ...). The user has the possibility to display any kind of quantitative data from gene and protein experiments directly within the pathways (colours ...
Freeware
tags: pathway, kegg, genmapp, biocarta, biology, bioinformatics, bioscience, affymetrix, microarray, experiment, analysis, analyse, ncbi, sequence, protein, gene, annotation

Geneious PRO x64
Geneious PRO x64 6.0.4   
Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring ... public data as it downloads. More... Teach Bioinformatics: * Create interactive tutorials with direct links ...
Trialware | $249.00
tags: x64 molecular biology, x64 biochemistry research, x64 molecular research, x64 bioinformatics, x64 biology, x64 research

Chemistry Development Kit
Chemistry Development Kit 1.5.2 Dev   
Chemistry Development Kit is now developed by more than 40 developers all over the world and used in more than 10 different academic as well as industrial projects world wide. ...
Open Source
tags: Java library, chemoInformatics library, bioinformatics library, chemistry, chemoinformatics, bioinformatics

CLC Sequence Viewer 64-bit
CLC Sequence Viewer 64-bit 6.8.1   
... enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options. Bioinformatics features in CLC Sequence Viewer Multiple alignment ...
Freeware
tags: data x64, viewer x64, graphic x64, bio x64, analyse x64, education x64, learn x64

PEAKS Studio
PEAKS Studio 6.0 Build 20120   
PEAKS is proteomic mass spectrometry software, designed for the researcher interested in highly confident results. Whether studying an unsequenced organism, sequencing synthetic peptides or analyzing known sequences, PEAKS will return optimal ...
Trialware
tags: mass spectrometry, organism study, PTM identification, spectrometry, organism, peptide

Cytoscape x64
Cytoscape x64 3.0.0   
Cytoscape x64 is an open source bioinformatics software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data. ...
Open Source
tags: x64 molecular interaction network, x64 molecule visualization, x64 bioinformatics viewer, x64 visualization, x64 molecule, x64 Biology

Seq Monk
Seq Monk 0.24.1   
SeqMonk is a powerful application designed to enable you to visualize and analyze mapped sequence data. It was written for use with mapped next generation sequence data but can in ...
Open Source
tags: view sequence data, analyse sequence data, sequence data analysis, sequence data, view, analyse

CLC Main Workbench
CLC Main Workbench 5.5.0   
... a High Performance Computing center * Use CLC Bioinformatics Cell to accelerate HMMER, ClustalW, and Smith-Waterman * ... Next Generation Sequencing data * Plug in the Bioinformatics Cube and increase your search speed up to ...
Trialware | $3 950.00
tags: protein sequence, protein statistic, 3D molecule, protein, sequence, analyze

CLC DNA Workbench
CLC DNA Workbench 5.5.0   
... the hidden powers in your CPU with the Bioinformatics Cell * Plug in the Bioinformatics Cube and increase your search speed up to ... CLC Database Solution 4. You will have a bioinformatics solution that continuously evolves * The frequent program ...
Trialware | $1 975.00
tags: DNA sequence analyses, pattern search, project management, bioinformatics, DNA, sequence

Geneious Basic x64
Geneious Basic x64 6.0.4   
... data that allows any molecular biologist do core bioinformatics tasks in a flash by removing painful data-administration. Geneious comes pre-bundled with bioinformatics functions from publication or nucleotide searching through to ...
Freeware
tags: x64 molecular biology, x64 biochemistry research, x64 molecular research, x64 bioinformatics, x64 biology, x64 research

Melanie Viewer
Melanie Viewer 7.05   
Melanie Viewer is a useful application that will help researchers visualize gels and related data obtained through the use of the full version of Melanie by colleagues. It can also be ...
Freeware
tags: Melanie Viewer, Gel Viewer, Analyze Gel, Viewer, Gel, Melanie

Melanie
Melanie 7.05   
Melanie offers a unique and flexible interface for the comprehensive visualization, exploration and analysis of 2D gel data. It provides powerful and innovative solutions to shorten the path from data acquisition ...
Trialware
tags: Gel Analysis, Analyze Gel, 2D Gel, Gel, Analyzer, Analysis

ChIP Monk
ChIP Monk 1.2.2   
ChIPMonk is a powerful application designed to provide visualisation and analysis of ChIP-on-chip data. ChIPMonk is a program to enable the visualisation and analysis of ChIP-on-chip data. It's main features ...
Open Source
tags: Chip-on-chip array data, Chip-on-chip analysis, array data analysis, Chip-on-chip, array data, analysis

AltAnalyze x64
AltAnalyze x64 2.02 Beta   
... Agilent). This software requires no advanced knowledge of bioinformatics programs or scripting. All you will need are your junction read or microarray files along with some simple descriptions of the ...
Freeware
tags: analyze raw microarray data, raw microarray data analysis, view protein sequence, analyzer, analyze, analysis


SeqView 1.3   
... RGB, BGR sequences. So, if you needed a bioinformatics tool to help you with sequence analysis, give this tool a try and see if its capabilities are enough to satisfy ...
Open Source
tags: analyze sequence file, view sequence file, sequence file analysis, viewer, view, analysis


USeq 8.5.7   
... at the Huntsman Cancer Institute in the Utah Bioinformatics Shared Resource Center. A description of the statistics and comparison of methods used in USeq is now published, see Nix DA, ...
Freeware
tags: data sequence, high level analysis, estimate FDR, sequence, estimate, estimation

ZOOM Lite for Windows
ZOOM Lite for Windows 1.5.20100518   
ZOOM Lite is a next generation sequencing data mapping and visualization software. Users input reference genomes and Illumina short reads files or AB SOLiD color space reads files in various formats, ...
Freeware
tags: analyze DNA, genome analyzer, DNA map, analyzer, analyze, genome

Cylindrical BLAST Viewer
Cylindrical BLAST Viewer 1.4   
... Alignment data often arises in the field of Bioinformatics (and by extension Biology). These fields deal with sequences of residues, polymerized to form very long chains of heterogeneous nucleotide bases, ...
Open Source
tags: view alignments, BLAST file viewer, visualize BLAST, view, viewer, analyze

JDet
JDet 1.4.0   
JDet is a multiplatform software for the interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures. It contains the set of tools and features we consider ...
Open Source
tags: protein alignment, view protein sequence, align protein sequence, visualization, align, alignment
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