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Chemistry Development Kit
Chemistry Development Kit 1.5.6 Dev   
... In the past four years, the CDK library evolved into a fully blown chemoinformatics package with code reaching from QSAR descriptor calculations to 2D and 3D model building. ...
Open Source

BioRuby
BioRuby 2.0.0   
Open source bioinformatics library for Ruby BioRuby is a free library that provides an integrated environment in bioinformatics for the Ruby language. This BioRuby project ... set of free development tools and libraries for bioinformatics and molecular biology, for the Ruby programming language. ...
Open Source

Picard screenshot
Picard 2.27.2   
... Picard is implemented using the HTSJDK Java library HTSJDK to support accessing file formats that are commonly used for high-throughput sequencing data such as SAM and VCF. SAM ...
Open Source
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