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SearchGUI
SearchGUI 4.3.9   
SearchGUI is a user-friendly open-source graphical user interface for configuring and running proteomics identification search engines and de novo sequencing algorithms, currently supporting X! Tandem, MS-GF+, MS Amanda, MyriMatch, Comet, Tide, ...
Open Source
tags: Protein identification, Peptide search engine, Search engine, GUI, Protein, Identification, Peptide Search

Espresso ELN
Espresso ELN 10.6.3   
... notebook (ELN) suited for organic, organometallic, polymer and peptide chemistry, featuring a strong protocol editor, detection of synthetic context, substructure searches and optional data sharing and backup via server. It ...
Demo | $149.00
tags: electronic lab notebook, chemistry software, chemical reaction, electronic lab, chemistry, laboratory

Zeus
Zeus 1.5   
... be applied to sections of the molecular structure. Peptide/Nucleic structure can be "cartoonised" using 3d Ribbon based on Bernstein bezier curves depicting molecular backbone structure. Flexible colour configuration allows selection ...
Freeware
tags: PDB, peptide, protein, dna, nucleic acid, residues, molecular, viewer, molecule, atoms, visualisation

Peptizer screenshot
Peptizer 1.8.4   
Manual validation of MS/MS driven peptide identification is a critical evaluation process relying on ... of multiple Agent inspection the enables separation of peptide identifications by these rules. ...
Freeware
tags: manual validation automization, automize manual validation, large-scale proteomic endeavors, automize, automize, automization
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