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SearchGUI
SearchGUI 4.3.9   
SearchGUI is a user-friendly open-source graphical user interface for configuring and running proteomics identification search engines and de novo sequencing algorithms, currently supporting ... Andromeda, OMSSA, Novor and DirecTag. To start using SearchGUI, unzip the downloaded file, and double-click the SearchGUI-X.Y.Z.jar ...
Open Source
tags: Protein identification, Peptide search engine, Search engine, GUI, Protein, Identification, Peptide Search

Zeus
Zeus 1.5   
... very high quality molecular graphics. Zeus incorporates Sequence Search/Highlighting within the molecular structure with Wildcard capability. A ... be applied to sections of the molecular structure. Peptide/Nucleic structure can be "cartoonised" using 3d Ribbon based ...
Freeware
tags: PDB, peptide, protein, dna, nucleic acid, residues, molecular, viewer, molecule, atoms, visualisation
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