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PyMOL
PyMOL 3.0.2   
PyMOL is a user-sponsored molecular visualization system on an open-source foundation. Please support development ... file, ensuring that every object position, atom color, molecule representation, molecular state, frame, and movie can be ...
Shareware | $99.00

MOPlot
MOPlot 1.93   
MOPlot is a handy visualization application specially designed for fast molecular orbitals plotting ... according to the geometry definition in the calculation. Molecules can be turned in all directions under mouse ... displacement vectors and in animated form. For complex molecules where the calculation of the displacements may become ...
Freeware

PyRx
PyRx 0.8   
... PyRx also includes chemical spreadsheet-like functionality and powerful visualization engine that are essential for Rational Drug Design. ... a programming/scripting language. wxPython for cross-platform GUI. The Visualization ToolKit (VTK) by Kitware, Inc. Enthought Tool Suite, ...
Freeware

ShelXle
ShelXle 1.0 Rev 1636   
... (output) files with an interactive graphical display for visualization of a three-dimensional structure including the electron density (Fo) and difference density (Fo-Fc) maps. See J. Appl. Cryst. (2011). 44, 1281–1284. ...
Open Source

Cytoscape x64
Cytoscape x64 3.10.0   
... a general platform for complex network analysis and visualization. Cytoscape x64 core distribution provides a basic set of features for data integration and visualization. Additional features are available as plugins. Plugins are ...
Open Source

VEGA ZZ
VEGA ZZ 3.2.3.28   
... 16.777.216 colors). Cluster rendering (WireGL). 3D molecule view: wireframe with multivector bonds, CPK, ball & ... Enhanced atom coloring methods: atom, residue, chain, segment, molecule, constraints and custom. Atom selection & picking. ...
Freeware

Marvin Suite
Marvin Suite 20.20.0   
... example, one can employ MarvinSketch to create complex molecules from scratch; the program supports all types of atoms, with any valence, as well as radicals and isotopes. ...
Freeware
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