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BioRuby
BioRuby 2.0.0   
... BioRuby has components for sequence analysis, pathway analysis, protein modelling and phylogenetic analysis; it supports many widely used data formats and provides easy access to databases, external programs and public ...
Open Source
tags: bioinformatics library, bioinformatics development, ruby library, bioinformatics, library, develop

Portable UGENE
Portable UGENE 53.0   
Portable UGENE, developed by UniPro, is a versatile bioinformatics software suite designed to cater to the needs of researchers, educators, and students in the field of molecular biology. This portable version ...
Open Source
tags: Portable UGENE, download Portable UGENE, Portable UGENE free download, genome analysis, DNA sequencing program, Bioinformatics analyzer, Bioinformatics, genome, analyzer, analyze

Melanie
Melanie 9.2.2   
... to shorten the path from data acquisition to protein information, both for conventional 2-DE and DIGE (Fluorescence ... researchers analyze their 2-D electrophoresis gels to identify protein markers of interest. It avoids inaccuracies due to ...
Trialware
tags: Gel Analysis, Analyze Gel, 2D Gel, Gel, Analyzer, Analysis

Perfect Diet Tracker
Perfect Diet Tracker 3.10.28   
... and exercise items to the diary worldwide. Carbohydrates, Protein and Fat intake are also monitored automatically, so ... a weekly 'weigh in'. · Track your carbs, protein, fats and more. · International food database and ...
Trialware | $24.95
tags: Diet Tracker, Diet Organizer, Organize Diet, tracker, monitor, BMR

Kappa screenshot
Kappa 4.321.10549   
... A domain-specific language that allows the expression or protein interactions that can be used to build executable models. ...
Open Source
tags: create rule, simulate protein interaction, protein static analysis, rule, create, analyze

Advanced Pathway Painter
Advanced Pathway Painter 2.31   
... any kind of quantitative data from gene and protein experiments directly within the pathways (colours represent the ... experiment data is done over the gene or protein names and their accession numbers. Furthermore the user ...
Freeware
tags: pathway, kegg, genmapp, biocarta, biology, bioinformatics, bioscience, affymetrix, microarray, experiment, analysis, analyse, ncbi, sequence, protein, gene, annotation

GENOM 2005
GENOM 2005 3.42   
Genom 2005 is a feature rich and user friendly application for analysing array-experiments (e.g. from provider Affymetrix). It includes normalisation of raw data, additional gene information official gene names, location, function ...
Demo | $1 637.00
tags: affymetrix, microarray, pathway, function prediction, probeset, kegg, genmapp, biocarta, biology, bioscience, analyse, ncbi, sequence, dna, protein

Unipro UGENE 64-bit
Unipro UGENE 64-bit 50.0   
... a free visual software solution for DNA and protein sequence analysis. UGENE provides customizable tools for visualization, ... capabilities; Queries to NCBI BLAST and CDD databases; Protein secondary structure prediction using GOR IV and PSIPRED; ...
Freeware
tags: DNA x64, education x64, visual software x64, analyze x64, genetic x64, genome analyzer, genome analysis, sequence alignment

Staden
Staden 2.0.0b11   
A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows. Features: Sequence assembly (gap4/gap5) DNA/Protein analysis (spin) ...
Open Source
tags: DNA, Gap4, Gap5, Spin, trev, ancillary tools, Staden Package

DNAssist
DNAssist 3.11   
... conversion of DNA to a RNA or a protein sequence The conversion of RNA to a DNA or a protein sequence Translating a DNA sequence to the amino ... DNA Performing multiple alignments of DNA, RNA or proteins Obtaining the molecular weight of a nucleic acid ...
Freeware
tags: DNAssist, DNA Analyzer

RasMol
RasMol 2.7.5   
... molecular graphics program intended for the visualisation of proteins, nucleic acids and small molecules. The program is ... and colour schemes. Supported input file formats include Protein Data Bank (PDB), Tripos Associates' Alchemy and Sybyl ...
Open Source
tags: molecular graphics viewer, molecular modelling, protein molecule, molecule, chemistry, chemical

miRPI screenshot
miRPI 1.0   
... of 20-24 nucleotide length that regulate gene and protein expression in plants and animals. MiRNAs have so far been identified mostly by specific cloning of small RNA molecules, complemented by ...
Freeware
tags: find conserved miRNA, conserved miRNA finder, search conserved miRNA, analyze, analysis, find

Geneious PRO x64
Geneious PRO x64 6.0.4   
... exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features ... and cloning, access to NCBI and UniProt, BLAST, protein structure viewing, automated PubMed searching, and more. It ...
Trialware | $249.00
tags: x64 molecular biology, x64 biochemistry research, x64 molecular research, x64 bioinformatics, x64 biology, x64 research

Geneious Basic x64
Geneious Basic x64 6.0.4   
... alignment and tree-building, and includes functions for extracting protein translations, sequence analysis and 3D structure visualization. ... search sequences (with annotations), alignments, phylogenetic trees, publications, protein structures and more! Database integration: · Seamlessly ...
Freeware
tags: x64 molecular biology, x64 biochemistry research, x64 molecular research, x64 bioinformatics, x64 biology, x64 research

Cytoscape x64
Cytoscape x64 3.10.0   
... a set of custom annotation terms for your proteins, create a set of confidence values for your protein-protein interactions. Cytoscape x64 supports many use cases ...
Open Source
tags: x64 molecular interaction network, x64 molecule visualization, x64 bioinformatics viewer, x64 visualization, x64 molecule, x64 Biology

JDet
JDet 1.4.1   
... programs for extracting this kind of information from protein alignments. This software has been developed by Thilo Muth and Juan Antonio Garcia under the guidance of Florencio Pazos. ...
Open Source
tags: protein alignment, view protein sequence, align protein sequence, visualization, align, alignment

GProX screenshot
GProX 1.1.16   
... of-the-fly Enrichment Analysis: · Test for over-represented protein features · Select from several statistical approaches · Analyze protein annotations in clusters · Special features for GO term analysis Cluster protein regulation: · Partition proteins into clusters · Wide ...
Open Source
tags: analysis protein, visualize protein analysis, retrieve protein annotation, analyze, analysis, protenin

Gene Runner
Gene Runner 6.5.49 Beta   
Gene Runner saves the information on Amino Acids in tables and this data is also be used with the 'Protein Analysis' functions, the 'Suppressor' and the 'Translation Tables'. This is required ...
Freeware
tags: DNA analysis, analyze sequence, gene analysis, analyzer, sequence, analyze, DNA

Zeus
Zeus 1.5   
A powerful molecular visualisation tool supporting PDB/Brookhaven, MOL, MOL2/SYBYL and XYZ file formats. It incorporates a sophisticated rendering engine that can output very high quality molecular graphics. Zeus incorporates Sequence Search/Highlighting ...
Freeware
tags: PDB, peptide, protein, dna, nucleic acid, residues, molecular, viewer, molecule, atoms, visualisation

kcals4health
kcals4health 2.0   
... those calories between the major macro-nutrients: carbohydrates, fat, protein and alcohol. Instant summaries allow you to manage and plan your calorie intake and macronutrient ratios to achieve weight loss. Know ...
Shareware | $9.99
tags: Calorie, Calories, Count Calories, Counting Calories, Diet, Weight Loss, Lose Weight, Burn Fat, Macronutrient Ratio, Recipe, Recipes, USDA

SearchGUI
SearchGUI 4.3.14   
... their data. This includes the ability to assess protein and peptide identifications, quantify modifications, and validate results with high confidence. The software's integration with other tools in the CompOmics suite ...
Open Source
tags: SearchGUI, download SearchGUI, SearchGUI free download, protein identification, peptide search engine, search engine GUI, protein, identification, peptide, search

Unipro UGENE
Unipro UGENE 53.0   
... alignment, assembly, and annotation, supporting both DNA and protein sequences. The integrated algorithms, such as ClustalW, MUSCLE, ... includes tools for primer design, restriction analysis, and protein structure visualization. The 3D molecular viewer is particularly ...
Open Source
tags: Unipro UGENE, download Unipro UGENE, Unipro UGENE free download, genome analyzer, genome analysis, sequence alignment, genome, analyzer, HMM, builder

Jalview
Jalview 2.11.4.0   
... phylogenetic analysis, secondary structure prediction, and even access protein 3D structures directly within the application. The software's interoperability with other bioinformatics resources ensures that users can leverage the full spectrum ...
Open Source
tags: Jalview, Jalview free download, download Jalview, sequence alignment, visualization, biology, phylogenetic analysis, multiple alignment editor, University of Dundee, bioinformatics, sequence, molecular biology, molecule, protein, sequence analyzer

raxmlGUI
raxmlGUI 2.0.16   
... wide range of input data formats, including DNA, protein sequences, and binary data, making it versatile for various types of phylogenetic studies. Users can effortlessly import their datasets, select appropriate ...
Open Source
tags: raxmlGUI, download raxmlGUI, raxmlGUI free download, phylogenetic analysis, Bio-Informatics tool, phylogenetic analyzer, analyze, analyzer, analysis, phylogenetic
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